Index

B

build_row_map() (in module pyAPIC.core.solve_ctf_operators)

C

Case (class in pyAPIC) (class in pyAPIC.core.case)

check_full_column_rank() (in module pyAPIC.core.solve_ctf_operators)

D

data (pyAPIC.Case attribute) (pyAPIC.core.case.Case attribute)

directed_hilbert_transform_stack() (in module pyAPIC.core.reconstructor) dpix_c (pyAPIC.ImagingData property)

F

fft2c() (in module pyAPIC.core.reconstructor) form_diff_and_offset_operator() (in module pyAPIC.core.solve_ctf_operators) form_Zernike_operator() (in module pyAPIC.core.solve_ctf_operators)

freqXY_calib (pyAPIC.ImagingData property) from_mat() (pyAPIC.Case class method) (pyAPIC.core.case.Case class method)

G

get_ctf() (in module pyAPIC.core.solve_ctf_operators)

I

I_low (pyAPIC.ImagingData attribute) ifft2c() (in module pyAPIC.core.reconstructor)

illum_na (pyAPIC.ImagingData attribute) illum_px (pyAPIC.ImagingData attribute) ImagingData (class in pyAPIC)

L

load_mat() (in module pyAPIC)

M

mag (pyAPIC.ImagingData property) magnification (pyAPIC.ImagingData attribute) module pyAPIC pyAPIC.core pyAPIC.core.case pyAPIC.core.parameters pyAPIC.core.reconstructor pyAPIC.core.solve_ctf_operators pyAPIC.io pyAPIC.visual

N

na_cal (pyAPIC.ImagingData property)

na_calib (pyAPIC.ImagingData property) na_rp_cal (pyAPIC.ImagingData property)

P

params (pyAPIC.Case attribute) (pyAPIC.core.case.Case attribute) pixel_size (pyAPIC.ImagingData attribute) plot() (pyAPIC.Case method) (pyAPIC.core.case.Case method) plot_E_stack() (pyAPIC.Case method) (pyAPIC.core.case.Case method) plot_input() (pyAPIC.Case method) (pyAPIC.core.case.Case method) pupil_mask_stack() (in module pyAPIC.core.reconstructor) pyAPIC module pyAPIC.core module

pyAPIC.core.case module pyAPIC.core.parameters module pyAPIC.core.reconstructor module pyAPIC.core.solve_ctf_operators module pyAPIC.io module pyAPIC.visual module

R

ReconParams (class in pyAPIC) (class in pyAPIC.core.parameters) reconstruct() (in module pyAPIC.core.reconstructor) reconstruct_aberration (pyAPIC.core.parameters.ReconParams attribute), [1] (pyAPIC.ReconParams attribute), [1]

result (pyAPIC.Case property) (pyAPIC.core.case.Case property) run() (pyAPIC.Case method) (pyAPIC.core.case.Case method)

S

save() (pyAPIC.Case method) (pyAPIC.core.case.Case method) stitch() (in module pyAPIC.core.reconstructor)

stitch_method (pyAPIC.core.parameters.ReconParams attribute), [1] (pyAPIC.ReconParams attribute), [1] system_na (pyAPIC.ImagingData attribute) system_na_px (pyAPIC.ImagingData attribute)

T

to_pixel_coords() (in module pyAPIC)

U

unwrap_phase_differences() (in module pyAPIC.core.solve_ctf_operators)

W

wavelength (pyAPIC.ImagingData attribute)